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Thesis

Guillaume THIBAULT. Indices de forme et de texture, de la 2D vers la 3D. Application au classement de noyaux de cellules. Présentation. [bib]




Journal Papers

6 - Takahiro Tsujikawa, Sushil Kumar, Rohan N. Borkar, Vahid Azimi, Guillaume Thibault, Young Hwan Chang, Ariel Balter, Rie Kawashima, Gina Choe, David Sauer, Edward El Rassi, Daniel R. Clayburgh, Molly F. Kulesz-Martin, Eric R. Lutz, Lei Zheng, Elizabeth M. Jaffee, Patrick Leyshock, Adam A. Margolin, Motomi Mori, Joe W. Gray, Paul W. Flint, and Lisa M. Coussen. "Quantitative multiplex immunohistochemistry reveals myeloid-inflamed tumor-immune complexity associated with poor prognosis", accepted in Cell Reports.

5 - Guillaume Thibault, A. Tudorica, A. Afzal, S. Chui, A. Naik, M. Troxell, K. Kemmer, K. Oh, N. Roy, N. Jafarian, M. Holtorf, Wei Huang and Xubo Song. "DCE-MRI Texture Features for Early Prediction of Breast Cancer Therapy Response", in Tomography, vol. 3, n° 1, March 2017.
[bib]

4 - Xiwei Zhang, Guillaume Thibault, Etienne Decencière, Beatriz Marcotegui, Bruno Laÿ, Ronan Danno, Guy Cazuguel, Gwénolé Quellec, Mathieu Lamard, Pascale Massin and Ali Erginay. "
Exudate detection in color retinal images for mass screening of diabetic retinopathy", in Medical Image Analysis, vol. 18, n° 7, pp. 1026-1043, 2014. [bib]

3 - Guillaume Thibault, Jesus Angulo and Fernand Meyer. "
Advanced Statistical Matrices for Texture Characterization: Application to Cell Classification", in IEEE Transaction on Biomedical Engineering, vol. 61, n° 3, pp. 630-637, 2014. [bib]

2 - Etienne Decencière, Guy Cazuguel, Xiwei Zhang, Guillaume Thibault, Jean-Claude Klein, Fernand Meyer, Beatriz Marcotegui, Gwénolé Quellec, Mathieu Lamard, Ronan Danno, Damien Eli, Pascale Massin, Ali Erginay, Bruno Laÿ and Agnès Chabouis. "
TeleOphta: Machine Learning and image processing methods for teleophthalmology", in IRBM, vol. 34, n° 2, pp. 196-203, 2013. [bib]

1 - Guillaume Thibault, Bernard Fertil, Claire Navarro, Sandrine Pereira, Pierre Cau, Nicolas Levy, Jean Sequeira and Jean-Luc Mari. "
Shape and Texture Indexes, Application to Cell Nuclei Classification", in International Journal of Pattern Recognition and Artificial Intelligence (IJPRAI), vol. 27, n° 1, 2013. [bib]




arXiv

1 - Guillaume Thibault and Izhak Shafran. "Fuzzy Statistical Matrices for Cell Classification", November 2016.




National Journal Paper

1 - Guillaume Thibault, Bernard Fertil, Jean Sequeira et Jean-Luc Mari. « Indices de forme et de texture, de la 2D vers la 3D. Application au classement de noyaux de cellules », dans Revue des Sciences et Technologies de l’Information (RSTI) 2/2010. [bib]




Book Chapter

1 - Claudia S. Lòpez, Cédric Bouchet-Marquis, Christopher P. Arthur, Jessica L. Riesterer, Gregor Heiss, Guillaume Thibault, Lee Pullan, Sunjong Kwon, and Joe W. Gray. “A fully integrated three-dimensional fluorescence to electron microscopy correlative workflow”, to appear in Methods in Cell Biology, 2017.




National Book

1 - Guillaume Thibault. « Indices de forme et de texture ». Aux Editions Universitaires Européennes, ISBN 978-613-1-53989-3. [bib]




Patent

1 - Xiwei Zhang, Guillaume Thibault, Etienne Decencière. « Method for analysing a photograph of the retina or a bank of photographs of the retina », WO2013160619 (A1), 2013/10. Google, Espacenet. [bib]




Conferences

?? - Young Hwan Chang, Guillaume Thibault, Brett Johnson, Owen Madin, Cole Meyers, Vahid Azimi, Danielle Jorgens, Christoper Corless, Adam Margolin, and Joe W. Gray. « Deep Leaning based Nucleus Classification in Histological Tissue Image », submitted in EMBS 2017.

17 - Vahid Azimi, Young Hwan Chang, Guillaume Thibault, Jaclyn Smith, Takahiro Tsujikana, Christoper Corless, Adam Margolin, and Joe W. Gray. « Quantitative Image Analysis Pipeline for Tumor Purity Estimation », accepted in IEEE ISBI 2017.

16 -
Young Hwan Chang, Guillaume Thibault, Brett Johnson, Adam Margolin, Joe W. Gray. "Integrative Analysis on Histopathological Image for Identifying Cellular Heterogeneity", in SPIE Medical Imaging (Digital Pathology), 2017 (Accepted).

15 - Guillaume Thibault, A. Tudorica, A. Afzal, S. Chui, A. Naik, M. Troxell, K. Kemmer, K. Oh, N. Roy, M. Holtorf, Wei Huang, and Xubo Song. « 
Texture Feature Analysis of Quantitative and Semi-Quantitative DCE-MRI Metrics for Early Prediction of Breast Cancer Therapy Response », in International Society for Magnetic Resonance in Medicine (ISMRM) 2016. [bib]

14 - Young Hwan Chang, Guillaume Thibault, Vahid Azimi, Brett Johnson, Danielle Jorgens, Jason Link, Adam Margolin and Joe Gray. « 
Quantitative Analysis of Histological Tissue Image based on Cytological Profiles ans Spatial Statistics », in the 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBS) 2016.

13 - Guillaume Thibault, A. Tudorica, A. Afzal, S. Chui, A. Naik, M. Troxell, K. Kemmer, K. Oh, N. Roy, M. Holtorf, Wei Huang, and Xubo Song. « 
Early Prediction of Breast Cancer Therapy Response to Neoadjuvant Chemotherapy through Texture Analysis of DCE-MRI », in MICCAI-BIA 2015, 3rd MICCAI workshop on Breast Image Analysis, p145-152.[bib]

12 - Guillaume Thibault, A. Tudorica, A. Afzal, S. Chui, A. Naik, M. Troxell, K. Kemmer, K. Oh, N. Roy, M. Holtorf, Wei Huang, and Xubo Song. « 
DCE-MRI Texture Analysis for Early Prediction of Breast Cancer Therapy Response », in International Society for Magnetic Resonance in Medicine (ISMRM) 2015. [bib]

11 - Nastaran Ghadar, Xikang Zhang, Kang Li, Deniz Erdogmus, Guillaume Thibault, Alireza Bayestehtashk, Izhak Shafran, Kris Coleman, and Kathleen Grant. « 
Visual hull reconstruction for automated primate behavior observation », in IEEE International Workshop on Machine Learning for Signal Processing (MLSP), 2013.

10 - Guillaume Thibault, Kristiina Iljin, Christopher Arthur, Izhak Shafran, and Joe Gray. « 
Adaptive H-Extrema for Automatic Immunogold Particle Detection », in CIARP 2013. [bib]

9 - Guillaume Thibault, Jesùs Angulo. « 
Efficient Statistical/Morphological Cell Texture Characterization and Classification », in ICPR 2012. Poster. [bib]

8 - Xiwei Zhang, Guillaume Thibault, Etienne Decencière, Guy Cazuguel, Gwénolé Quellec, Ronan Danno, Bruno Laÿ, Ali Erginay, Pascale Massin, Zeynep Guvenli-Victor, and Agnes Chabouis. « Automatic Detection of Exudates in Retinal Images », in
ARVO 2012. Poster. [bib]

7 - Xiwei Zhang, Guillaume Thibault, Etienne Decencière, Guy Cazuguel, Gwénolé Quellec, Ronan Danno, Bruno Laÿ, Ali Erginay, Pascale Massin, Zeynep Guvenli-Victor, and Agnes Chabouis. « Spatial Normalization of Eye Fundus Images », in ISBI 2012. Poster. [bib]

6 -
Jesùs Angulo, Delphine Reberioux, Guillaume Thibault, Chantal Etievant, and Fernand Meyer. « Self-normalization of cell images in multifocus quantitative fluorescence », in International Congress for Stereology (ICS) 2011, October, Beijing, China. [bib]

5 - Xiwei Zhang, Guillaume Thibault, and Etienne Decencière. «Application of the Morphological Ultimate Opening to the Detection of Microaneurysms on Eye Fundus Images from Clinical Databases», in
International Congress for Stereology (ICS) 2011. [bib]

4 - Guillaume Thibault, Jesùs Angulo, and Fernand Meyer. «
Advanced Statistical Matrices for Texture Characterization: Application to DNA Chromatin and Microtubule Netwok Classification», in International Conference on Image Processing (ICIP) 2011. [bib]

3 - Guillaume Thibault, Bernard Fertil, Claire Navarro, Sandrine Pereira, Pierre Cau, Nicolas Levy, Jean Sequeira, and Jean-Luc Mari. « Texture Indexes and Gray Level Size Zone Matrix. Application to Cell Nuclei Classification », in Pattern Recognition and Information Processing (PRIP) 2009. [bib]

2 - Guillaume Thibault, Bernard Fertil, Jean Sequeira, and Jean-Luc Mari.  «
Cell Nuclei Classification Using Shape And Texture Indexes » in WSCG 2008. Poster. [bib]

1 - Romain Raffin, Guillaume Thibault, and Gilles Gesquiere. « Simple And Efficient Tools For VirSculpt », in GRAPP 2006. [bib]




National Conferences

2 - Guillaume Thibault, Bernard Fertil, Jean Sequeira et Jean-Luc Mari. « Indices de textures : application au classement de noyaux de cellules », dans MajecSTIC 2008. [bib]

1 - Guillaume Thibault, Bernard Fertil, Jean Sequeira et Jean-Luc Mari. « Indices de formes : de la 2D vers la 3D. Application au classement de noyaux de cellules », dans AFIG 2007. [bib]




Master

Stage de master.